Function reference • combiroc

All functions

combi(): Compute combinations.

combi_score(): Compute the combi score using glm(link='binomial') models and optionally classifies the samples.

combiroc_long(): Reshape combiroc data in long format.

combs_with(): Show combinations with given markers.

demo_data: A demo dataset with proteomics markers

demo_unclassified_data: A demo dataset with unlabeled proteomics markers

load_data(): Load CombiROC data.

markers_distribution(): Show distribution of intensity values for all the markers both singularly and all together.

ranked_combs(): Rank combinations.

roc_reports(): Train logistic regression and compute ROC.

seurat_to_combiroc(): Load CombiROC data.

show_markers(): Show the composition of combinations.

single_markers_statistics(): Provide statistics for each marker.